Scaffold Ga0209409_1007692

Overview

Basic Information

• Taxon OID: 3300025589
• Scaffold ID: Ga0209409_1007692
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNMR1_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5253
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: Japan
• Coordinates
  • Lat. (^o): 36.29
  • Long. (^o): 139.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014634	Metagenome / Metatranscriptome	261	Y
F020859	Metagenome / Metatranscriptome	221	Y
F048731	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209409_10076923	F020859	AGGAGG	MEKIIAKEVNPAYVDFSLYFYDDSLKSVSGENCAVYIIPGDRRRYGGFNLEEYEEIEEKAKAIINGFRDVSAKWPYGYATYKEVMEDNAIPYTSHTCHLLKKWAEYANPYDTSDIAEFLTITTGEEWNVKAFRGYSQGDYCEVVYCVNHYTPEHIEEIGKLWLGCGTEFCIDECYGYYVPDTIRWEEGERLRQYLADLYGCEPEELEIHLYDGEHMVTDYRIMD
Ga0209409_10076927	F048731	AGGAGG	MIKKALRYALSISEDPKEIKKHVEEYMAAAGFDRRYKFKWCAVSGNHKFTFSGIFEYAGQRYYFNRLNDLHLEKI
Ga0209409_10076928	F014634	AGGAGG	MKYQGKEGKAMVQKQIEERVKQIFNLKWIRDFVEANIKSIEWIEEDGEKRKILVIDTLFDGGVGTYIPGWVLELFGEADGYDLEDPHNLEKNEGIYDALMFLEDEVNECLNKLLPSKGMYYIGYHEADGSYCLFYTEYEEE