Scaffold Ga0208546_1002036

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1002036
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6135
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F021974	Metagenome / Metatranscriptome	216	Y
F057764	Metagenome / Metatranscriptome	136	Y
F087139	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_10020361	F021974	N/A	MSNPNIVSEIYSYHTNWKEGKVNQMWIEQITDKECDNLYVAVAHNPRNGSTMEMSNPRTSYHETLNWVRGFCGTFCILN
Ga0208546_100203610	F005089	N/A	MNINDLLDSIKLTEELAMENYQQRNGVVDYRLDGICNHYFPLYVEGNPSYKNGEVCLTCKVSKTVKGQFRYTFQVNGKRIAEKRIASEFLSLGAFR
Ga0208546_100203615	F087139	N/A	MLLSKTSFNDSKVLPFIVKKEKEYTEEGCYSLHLFSRTVITKEGKKYRYLPLRFEGEEARFKQRKDAEDYARYRLALD
Ga0208546_100203622	F057764	GGA	MISLRNPRTKTPYWNFWKVVFAGWLIRYPGKTLRIIGVPLGFLIVMIYNAVT