Basic Information | |
---|---|
Taxon OID | 3300025585 Open in IMG/M |
Scaffold ID | Ga0208546_1001711 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6753 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000557 | Metagenome / Metatranscriptome | 1026 | N |
F003267 | Metagenome / Metatranscriptome | 496 | N |
F008996 | Metagenome | 324 | N |
F009126 | Metagenome / Metatranscriptome | 322 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208546_10017111 | F009126 | N/A | MAISVLSGSPQAATPVYNKMLFKVSGSLTSGANYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGN |
Ga0208546_10017114 | F000557 | N/A | MKLQDLTIDQFQRIAALEFSPALTDSDKRVGVVAIVEGVEVAIVRDMPATALTKRYKAIVKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMDMNTTDERQLVQNLHRIMATLCREAGFMGWFPKKYDGAGHADRAELLKANAKIGDVWGVVSFFLLSSESYLKILSDYSKHLMTKAQGL |
Ga0208546_10017116 | F008996 | N/A | MKLLANIAYHHHPDRVANLTKVIEAIKSYPVQAEIFVDINDPQAIHELAHLPVTFHAHTSMGHPWELTSKHRNRIAEVYQHFDWVAYFEDDMMLPKEGFVNFTKQFDPMYKDNLYPSFTRIETYPDKEGEFSPDITFNLTPNVWKEWNGKTYVSLPYYINYHAFWMFSTKRLAEILGRNPQALQMIPNNGLYRESLASLPIWSLGLNPMLEMDENGELADHCKVYHLTNNYQGQSRDIKEIFRR |
Ga0208546_10017118 | F003267 | N/A | MKLNRPVIGLDLTEPAPMKLIHYYHIYCGGGGQWQLILNQHMMALCNYGLIEQLDEIRVGIVGPPEQRKAVKEILEGSLIAPKVKVVVTRTNAWEQATLTEMYKASQDEDAAYLYAHTKGSANPSLVAQLWGRSMIFFNIVAWERSLAELEKVDAVGCHWLTKEEFPHIADHNNPEGYPYFGGNFWWAKSSHIRELGEPQRDRRYQGEHWIGKREGMTVYDSNKGWPDPSKFVITF |
⦗Top⦘ |