NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000586

Scaffold Ga0208546_1000586


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000586 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12941
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (15.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F005845Metagenome / Metatranscriptome388Y
F009126Metagenome / Metatranscriptome322N
F012449Metagenome / Metatranscriptome280Y
F046337Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100058612F012449AGCAGMDVLILPLLVSSLAALAIAEYHVLPAWWYRTWLGRHKPFSCITCLSFWLGACLTLLTCDWMLAPVYGLASAGLTVVILQLTNR
Ga0208546_100058623F000557N/AMKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKEIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAGWLGWFSKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSEAYLQILSDYSKHLTKKAADQ
Ga0208546_100058626F009126N/AMAISVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGN
Ga0208546_10005868F005845N/AMLNPKPMKPTPTDFRRWQIHIRKACATCLTPDHAETISPWRVNWVLLGHVLNAKKA
Ga0208546_10005869F046337N/AMPIPMEEVFLALQDGNYAVGWLTEGQITFTNIHGEAWWTHEVAAWMYPKKP

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