Scaffold Ga0208546_1000586

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000586
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12941
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F005845	Metagenome / Metatranscriptome	388	Y
F009126	Metagenome / Metatranscriptome	322	N
F012449	Metagenome / Metatranscriptome	280	Y
F046337	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100058612	F012449	AGCAG	MDVLILPLLVSSLAALAIAEYHVLPAWWYRTWLGRHKPFSCITCLSFWLGACLTLLTCDWMLAPVYGLASAGLTVVILQLTNR
Ga0208546_100058623	F000557	N/A	MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKEIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAGWLGWFSKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSEAYLQILSDYSKHLTKKAADQ
Ga0208546_100058626	F009126	N/A	MAISVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGN
Ga0208546_10005868	F005845	N/A	MLNPKPMKPTPTDFRRWQIHIRKACATCLTPDHAETISPWRVNWVLLGHVLNAKKA
Ga0208546_10005869	F046337	N/A	MPIPMEEVFLALQDGNYAVGWLTEGQITFTNIHGEAWWTHEVAAWMYPKKP