Scaffold Ga0208546_1000505

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000505
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14300
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (33.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F038648	Metagenome / Metatranscriptome	165	N
F086598	Metagenome / Metatranscriptome	110	N
F097203	Metagenome	104	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100050511	F001964	AGGAGG	MSRNLFAPPKFKVQINGSLGWADLKEKVVMYKTLEYPTRKEAEATARELNPGEYTQGRIRVVPVEMPEDYDVYPTPERTKP
Ga0208546_100050514	F002227	N/A	MKLTIQSKQNAQTIIDLFNAIITGETEEHGATPMSIYDEEKHICSIVAANGEQILELIIEREPGDRICPAFEGNPDEEKLP
Ga0208546_100050518	F103133	N/A	MRYKIQLSTSTGGWSDLRESANDGQTYETCLFPTRKAALAAREEFSELSEFLETLRIVPAETPETENIYA
Ga0208546_100050523	F097203	N/A	MNYPEQIPTAYAADSALERAYRLGWNHGHGIACHNVPSIGDSIDRSIDWVGLGKTVTAENITEYHECLCFAAESGSREYSPFEFTAHEFNESDDANELWEAFESGVSDSIRFDLKGYSYAELV
Ga0208546_100050529	F038648	N/A	MPVFTIPKGVEIPENLKEGEAFQTMATIVLGKGGKAEVIEIDGVAIPGYEKQSKGKKMAEQGGEDDGEMESENEAEVSGPPGFIAEVMRRGAGPMR
Ga0208546_10005053	F003748	N/A	MFQVNRKEAAGGRYIDTEGDFRVTLIKVEENLDPKGREVCKLTFRTEDGASISDRFLNQENVWWRVNSLVAATNHNVPDGTQVDFLGVKGSYANFLKSMIGLELIITTRFEDYESNGEKKKAVRLKNMKPIATTPDTEEKPF
Ga0208546_10005058	F086598	N/A	METDKLTQLEQNFATLAGFVERATKSLGRIEKTLKEHERKIDEALQRSSHQDDDDSDCEGFGPKPERQPFNPNAETYTLELHHGPYTIRRDDGESDKEWQRRKDHLMDQRVTFLNGSGVNGTPEQVAYLQRIEERLGRKIFNLPLATT