NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208546_1000494

Scaffold Ga0208546_1000494


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000494 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14511
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033771Metagenome176N
F045056Metagenome153N
F063621Metagenome129N
F067885Metagenome125N
F075872Metagenome118N
F090300Metagenome108N
F096904Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100049413F067885GGAMTLDEAMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARFAS
Ga0208546_100049414F090300N/AMNLDLITILLLAALTALAMNRYNVLPAWYYRYAKCKPLTCLTCLAIWWGVVLTITASNLHWLLTIPVGLSAAGLTVLIIKLSEK
Ga0208546_10004942F063621N/AMSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKTFSNRPVTSTLASSESDFIGVLANVSGIALRVTYDDAATRLPFLVTGSTSTISNIINAGPYGVYNLTALQCSDGSAGSVNFPANGGKVAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYNDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYASECWIQLGTQLVPVVVQTNTYNIRKRVVDKLQQISVDVKVGYENTAL
Ga0208546_100049422F075872N/AMTRERSFKHFYPIPHDGGFIEPIIHIEYEAHDWGNEHAGSIDVLDAWVSSFKYIKLDITTPEVKVGEVPPVLFEWKKAVMSDSETESAQAWLDQTPLDFFHDAAFQNECDIYNEPTLFLQ
Ga0208546_10004943F045056N/AMKFTTEIEGDVLGIGADVTKEFSLSKSPDVNAALIRWMQDVIKLTVEGIDRVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSPSHVAAIRKWAIDKALGIPADEIDAAAYNIAKSIKRRGIKGRPFLNQVLTDAKMDELVSSIAQVVGKEISISINV
Ga0208546_10004945F033771N/AMSILNKITVDQFQRIVSIEANAIYTTSDKKIGVIAVLDCIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRNAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRKSLTEQERKMTTAKA
Ga0208546_10004949F096904N/AMTLPELQHLLNLIDTDYKRKMDAYKLGIDLSEFGESAQEVIDLLLKHVFDEHQYETLCWWMYEKDFGRREDLQMWDNDGKEICRTVEELHQFLFA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.