Basic Information | |
---|---|
Taxon OID | 3300025585 Open in IMG/M |
Scaffold ID | Ga0208546_1000494 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 14511 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (21.74%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F033771 | Metagenome | 176 | N |
F045056 | Metagenome | 153 | N |
F063621 | Metagenome | 129 | N |
F067885 | Metagenome | 125 | N |
F075872 | Metagenome | 118 | N |
F090300 | Metagenome | 108 | N |
F096904 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208546_100049413 | F067885 | GGA | MTLDEAMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARFAS |
Ga0208546_100049414 | F090300 | N/A | MNLDLITILLLAALTALAMNRYNVLPAWYYRYAKCKPLTCLTCLAIWWGVVLTITASNLHWLLTIPVGLSAAGLTVLIIKLSEK |
Ga0208546_10004942 | F063621 | N/A | MSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKTFSNRPVTSTLASSESDFIGVLANVSGIALRVTYDDAATRLPFLVTGSTSTISNIINAGPYGVYNLTALQCSDGSAGSVNFPANGGKVAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYNDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYASECWIQLGTQLVPVVVQTNTYNIRKRVVDKLQQISVDVKVGYENTAL |
Ga0208546_100049422 | F075872 | N/A | MTRERSFKHFYPIPHDGGFIEPIIHIEYEAHDWGNEHAGSIDVLDAWVSSFKYIKLDITTPEVKVGEVPPVLFEWKKAVMSDSETESAQAWLDQTPLDFFHDAAFQNECDIYNEPTLFLQ |
Ga0208546_10004943 | F045056 | N/A | MKFTTEIEGDVLGIGADVTKEFSLSKSPDVNAALIRWMQDVIKLTVEGIDRVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSPSHVAAIRKWAIDKALGIPADEIDAAAYNIAKSIKRRGIKGRPFLNQVLTDAKMDELVSSIAQVVGKEISISINV |
Ga0208546_10004945 | F033771 | N/A | MSILNKITVDQFQRIVSIEANAIYTTSDKKIGVIAVLDCIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRNAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRKSLTEQERKMTTAKA |
Ga0208546_10004949 | F096904 | N/A | MTLPELQHLLNLIDTDYKRKMDAYKLGIDLSEFGESAQEVIDLLLKHVFDEHQYETLCWWMYEKDFGRREDLQMWDNDGKEICRTVEELHQFLFA |
⦗Top⦘ |