Scaffold Ga0208546_1000494

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000494
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14511
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F045056	Metagenome	153	N
F063621	Metagenome	129	N
F067885	Metagenome	125	N
F075872	Metagenome	118	N
F090300	Metagenome	108	N
F096904	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100049413	F067885	GGA	MTLDEAMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARFAS
Ga0208546_100049414	F090300	N/A	MNLDLITILLLAALTALAMNRYNVLPAWYYRYAKCKPLTCLTCLAIWWGVVLTITASNLHWLLTIPVGLSAAGLTVLIIKLSEK
Ga0208546_10004942	F063621	N/A	MSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAYSPSAYIAATVSGDTPAIKTFSNRPVTSTLASSESDFIGVLANVSGIALRVTYDDAATRLPFLVTGSTSTISNIINAGPYGVYNLTALQCSDGSAGSVNFPANGGKVAVLVTFNTAGTNTSAFSRTAAYTYVIDNCQRYNDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYASECWIQLGTQLVPVVVQTNTYNIRKRVVDKLQQISVDVKVGYENTAL
Ga0208546_100049422	F075872	N/A	MTRERSFKHFYPIPHDGGFIEPIIHIEYEAHDWGNEHAGSIDVLDAWVSSFKYIKLDITTPEVKVGEVPPVLFEWKKAVMSDSETESAQAWLDQTPLDFFHDAAFQNECDIYNEPTLFLQ
Ga0208546_10004943	F045056	N/A	MKFTTEIEGDVLGIGADVTKEFSLSKSPDVNAALIRWMQDVIKLTVEGIDRVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSPSHVAAIRKWAIDKALGIPADEIDAAAYNIAKSIKRRGIKGRPFLNQVLTDAKMDELVSSIAQVVGKEISISINV
Ga0208546_10004945	F033771	N/A	MSILNKITVDQFQRIVSIEANAIYTTSDKKIGVIAVLDCIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRNAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRKSLTEQERKMTTAKA
Ga0208546_10004949	F096904	N/A	MTLPELQHLLNLIDTDYKRKMDAYKLGIDLSEFGESAQEVIDLLLKHVFDEHQYETLCWWMYEKDFGRREDLQMWDNDGKEICRTVEELHQFLFA