Basic Information | |
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Taxon OID | 3300025585 Open in IMG/M |
Scaffold ID | Ga0208546_1000390 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16543 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (55.17%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028146 | Metagenome | 192 | N |
F048934 | Metagenome | 147 | N |
F051072 | Metagenome | 144 | Y |
F081254 | Metagenome | 114 | N |
F085379 | Metagenome | 111 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208546_100039010 | F051072 | N/A | MNNDFNRSTPVKNTTGGGHSAARYTGTHGHKERSHYWVFIPGEGWVTWLEIHKQFSAAFNDWQMRHVLGLRKAKTKTQ |
Ga0208546_100039011 | F081254 | N/A | MTDQHAEQIIVELRAIRSLLANKPAAPAAASAPAPAGAPKDIPQPSELVSDPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRPEDVRLRNAARQLVHGQRGTLAAGSKVTLVTETLTEEVPF |
Ga0208546_100039013 | F028146 | N/A | METTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDDTQSEPKAKASFTIEWDALAMAPTITVKVGWSVRFKDESEAVVDPLQAKLPIGGVE |
Ga0208546_100039017 | F085379 | GGAGG | MSARPNPKSELIDEMVARFAPFKEIQAAVRMQQQAVRQRIYNKGYRREYITHEERAHLLRRRGVKP |
Ga0208546_100039029 | F048934 | GGAGG | VVTYTLNRQPVHRLRYDGASEAAKVSCEMFERLLELDTLKHDSAANLVRRLATLADLSPSAFRLVLRAGSGDTGSILASFEDQARDRGKTRQALHWEWQEDVRRIRMVFPEVAAVLVELRETIKHREDAMSSADGLREAMRHTEGDE |
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