Scaffold Ga0208546_1000390

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000390
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16543
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (55.17%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028146	Metagenome	192	N
F048934	Metagenome	147	N
F051072	Metagenome	144	Y
F081254	Metagenome	114	N
F085379	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100039010	F051072	N/A	MNNDFNRSTPVKNTTGGGHSAARYTGTHGHKERSHYWVFIPGEGWVTWLEIHKQFSAAFNDWQMRHVLGLRKAKTKTQ
Ga0208546_100039011	F081254	N/A	MTDQHAEQIIVELRAIRSLLANKPAAPAAASAPAPAGAPKDIPQPSELVSDPGSVEVHFGKNKGTALRSLGAKSVEWYAQEPEPRIGNNGKPFPPRPEDVRLRNAARQLVHGQRGTLAAGSKVTLVTETLTEEVPF
Ga0208546_100039013	F028146	N/A	METTHEIKKAAVIAAASEQVRALLETHYDAMRKAAEESFVDDDTQSEPKAKASFTIEWDALAMAPTITVKVGWSVRFKDESEAVVDPLQAKLPIGGVE
Ga0208546_100039017	F085379	GGAGG	MSARPNPKSELIDEMVARFAPFKEIQAAVRMQQQAVRQRIYNKGYRREYITHEERAHLLRRRGVKP
Ga0208546_100039029	F048934	GGAGG	VVTYTLNRQPVHRLRYDGASEAAKVSCEMFERLLELDTLKHDSAANLVRRLATLADLSPSAFRLVLRAGSGDTGSILASFEDQARDRGKTRQALHWEWQEDVRRIRMVFPEVAAVLVELRETIKHREDAMSSADGLREAMRHTEGDE