NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208546_1000104

Scaffold Ga0208546_1000104


Overview

Basic Information
Taxon OID3300025585 Open in IMG/M
Scaffold IDGa0208546_1000104 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39547
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (50.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003889Metagenome463Y
F034160Metagenome / Metatranscriptome175Y
F087065Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208546_100010419F003889N/AVGPEYVAIGLTALISAVTGGTWMANKILARQSQDIQQAFSYTNSQKRRIDLLEDQINRMPMEYVLKVDFLREIKEMHDNFREINNKLDKLMEKILSK
Ga0208546_10001042F087065N/AMQTKQAKRWQHDWRQQVGERPTQQNAELFHSYVEFAYQMLEELGSADFVYSDLRQVCQPQYLFQVVCDMQGDKLSMRIHQDKDGLKVVVIHKI
Ga0208546_10001045F034160GGAMDMKEGAFTAKAKSRGISTAQLQENVLSNPDKYDPKTVKQANLRKTLVGLHKKKKGK

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