Scaffold Ga0208546_1000056

Overview

Basic Information

• Taxon OID: 3300025585
• Scaffold ID: Ga0208546_1000056
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_<0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 52616
• Total Scaffold Genes: 117
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (70.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000808	Metagenome / Metatranscriptome	882	Y
F017484	Metagenome / Metatranscriptome	240	Y
F029721	Metagenome / Metatranscriptome	187	Y
F081257	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208546_100005682	F000808	GAGG	MEYTYALTTSYDGELVNTMRVSDMLTAVDAWEKCVDFGDAKEYATYNLSDPTGKMYTKTFYRNGEVVIR
Ga0208546_100005685	F029721	AGGA	MRSYSIEDLLVGQYYRPTSYARKFQGGEINFAEKRDDVWVGTDYQAYSIRFNGSKWATIAVRVSDL
Ga0208546_100005691	F017484	AGG	MSIEIFEMNKSGAGWVSLENASADTKLDLELAILTKAEMKMLCFKCHVEIPRGNVCVNHKNVKGAIYFE
Ga0208546_100005694	F081257	AGGA	MKTLSYTAEKGDTLVSVSNRLMVSEYQINNLLDSLVSNGYTILTTEVGDGDYSPHWQG