Scaffold Ga0209774_1042327

Overview

Basic Information

• Taxon OID: 3300025584
• Scaffold ID: Ga0209774_1042327
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_150m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1175
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005069	Metagenome / Metatranscriptome	413	Y
F012682	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209774_10423271	F005069	N/A	PIIKDKIMAEAVTVSDVVSMAFEGNPSGVKSAIGDVLQQKVMVALQNKKKDFAQTFLTKPNTDSKEPESSGEIENG
Ga0209774_10423272	F012682	GGA	MANVLVTQKLVDTEKKCIFKFTNVSDGSALANVKMIDVSTLNWAKHTLTLSGAEVEGFKIGEVISTAAAHSAVADGSEFFIVTGFTAGASTVEVVGWDYTNAKATAASTAYSNGDVIVGSVTGLHTRTAANSGALIELDYNVLVTKIQWVCSGLNVNIEWDGSTTEKSIAFLGGNGIINMSATEWPGIGSDAVGDTSGVLGDIQFTTVNESAGDGYTIIIECKKQSPGYDYPAYEENARLGHRVDYVLGNFT