NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208355_1032657

Scaffold Ga0208355_1032657


Overview

Basic Information
Taxon OID3300025581 Open in IMG/M
Scaffold IDGa0208355_1032657 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1406
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004503Metagenome / Metatranscriptome435Y
F005309Metagenome / Metatranscriptome405Y

Sequences

Protein IDFamilyRBSSequence
Ga0208355_10326572F005309GGAMLNKRKSRRRKMVLPVKVSVDKVTHLAHTVDITITGAQLGGLRTQLQPGMIISLQRGSKKAEFRVRCIRQLGPNELRAGIESLEPQDNFWGVDLSDDLEAKKDMQTLLTLLRSQSVM
Ga0208355_10326573F004503N/APPTAPAAGAVALVAAAPTPIGKSVKAGSPVSPAMLEIEVEHNFAEAHLSIWVDDRLTYTHLLEGTDKKHLVVFHHVQGHEFHALQVSPGKHRLRVQVTSDGATHDQSANVAGEFARGQESVLRINFNNHGEMNLSLQ

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