Scaffold Ga0208864_1033548

Overview

Basic Information

• Taxon OID: 3300025578
• Scaffold ID: Ga0208864_1033548
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0.5M (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1434
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001580	Metagenome	668	N
F003209	Metagenome	500	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208864_10335481	F003209	N/A	VALFTFFCTFGVYDELWSDPGSDLMAEVVQKLTEWMGIRRVISLVDRHESNGVEGSNKQILRHLRTLVHDLRVPKKWSDPTILSLVLFAINDGVNSETGVRPLDAMFGSEDSPYFRLPDSTDPSSITSAWVRGLDEDLRHIRAKSLAFQKELVQERCKDTPEEFQNKYQAGDFVLFQRDPSVPRPTKLTSPYTGPYEVIQQLKNDVECRHLVMGNIKVLHVTRLKLFVGTREEAYKAALLDAD
Ga0208864_10335482	F001580	GAG	MFFLVEFDDGDKVLLPYSKDLSSSAQFEEFIFAEPQLFPLRFNAADAPKRITAMRREPIRNIALHDVIYVDLRYWGYEWFDTLDLPNAYVTTYVVACEYVAWHTHRRYRYVKVRCPLFDEVLSDLWDYYYVYIYGSISTLNDTHTLVDEQFCLLYPAILPERNRDRLFAEFAARV