Scaffold Ga0209304_1011334

Overview

Basic Information

• Taxon OID: 3300025577
• Scaffold ID: Ga0209304_1011334
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3241
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010332	Metagenome / Metatranscriptome	305	N
F032664	Metagenome / Metatranscriptome	179	N
F095738	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209304_101133410	F032664	N/A	VIEMAQEIREICNTAMVPSPDPEAHVRFTGGSSLHCVGADGGLKSQATDLFILDNSASARVWALVQSVESVGGFGMYFDTKLGGEKQTLIHIDTRDERLLWMCPDEPKRRYVYYNNNPVYFLNLLSKELAKL
Ga0209304_10113342	F095738	GGA	MSTPEIDLRNMLNQEAYDEDLDDAYNHWVEYSVVPDLAKYLAAFDYDKFDSAVTNFKMFGADPVVSWIFEMITDSYDVYYAFMMRERDDIDFNEIAETYVNAYVCVDHFIQYNEEVTLND
Ga0209304_10113349	F010332	N/A	MSDRFNTALEPLWVFLEKGMIVRRGVLFVAIWMTLDSYAWAKMYAMTSASDPLIYAAVLGVPSALLVAAIKFYNEVRSVEK