Scaffold Ga0208660_1001694

Overview

Basic Information

• Taxon OID: 3300025570
• Scaffold ID: Ga0208660_1001694
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8763
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019651	Metagenome / Metatranscriptome	228	Y
F033501	Metagenome / Metatranscriptome	177	Y
F070137	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208660_10016941	F033501	N/A	PNDNNMNAIEFINEMDRLAEVHFGEFGYDTCSKAEKQAVIKSLLHNSVWVFLKVDKN
Ga0208660_100169410	F019651	N/A	MTTLEKFQEVANINFIQTPSHADIEIGELCTADSYELFYITQDFQDLQFDSEVYYYKPDFDTIMEAVDDCRHPKGTANVVCYDIEDWFDEHDMLNYLESEMDEESFEAFTNEEK
Ga0208660_10016947	F070137	N/A	MDLYLRLENRELRSLHKKFKEEVWLAFHQGELSDQDEFYTYFHEYLDNAVIYNSDCEAILNGNSEYHYEEHDLFSRPDNLAQAAYACLHDYFMDHIDTPNWEQMETVLNEK