Scaffold Ga0210110_1002676

Overview

Basic Information

• Taxon OID: 3300025565
• Scaffold ID: Ga0210110_1002676
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5125
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.015041
  • Long. (^o): -122.501831

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F082105	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210110_10026763	F005815	AGG	MSMNTTRLTTYWTLAEAATAIDFLDTLRDALWETYGEQITTMHREVYDARIQDTNQRELEFDDDIPFGSSAELVG
Ga0210110_10026766	F082105	N/A	MFIVPMAAPTMHELPHCAEQPNVTVQRAVAGTVMRIDSVGSGRVNEKK