NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210087_1024067

Scaffold Ga0210087_1024067


Overview

Basic Information
Taxon OID3300025559 Open in IMG/M
Scaffold IDGa0210087_1024067 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.05241603Long. (o)-121.76907401Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057515Metagenome136Y
F081548Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0210087_10240671F081548N/ASITLSWTSPADAVRAEVVRSPGRSGKKPGLVYRGKTPRTVDKRVRPGARYWYEVRLYDRAGNVSSRTLAVRPTVGILVPAPGAVLHRAPLVRWAPVKKARFYNLQLWRKREKLMTTWPSTSRLRLSETWTYEGKRRRLVDGRYQLYVWPAFGTLADPRYGKLVGRVSFVVRRGRVARPAASRGAA
Ga0210087_10240672F057515N/ARRRGDGDRRLRACLAATLSAGYRRRMRRALVLGLLVAASGATAALGASAPSNPLRLVLLPADFPAKADPVDAGPMPRSFALKLRGIDASGRGARYFASIPFGPERAQNVSGLVVTTPSVAQARKVYAWQKRTAMRRARGSATLRLPRFGDEQVALANGETDSGRLLVRRKTVVWRLEVAADGELSLSPARVRDELAKYAAKVRERVGGG

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