Scaffold Ga0210120_1006015

Overview

Basic Information

• Taxon OID: 3300025556
• Scaffold ID: Ga0210120_1006015
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2527
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.080353
  • Long. (^o): -122.108833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013183	Metagenome / Metatranscriptome	273	Y
F014856	Metagenome / Metatranscriptome	259	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210120_10060152	F013183	N/A	MTRASETHTQEELQEYLHWWQLPGGRLAPDHARALLAWEGTPESEREALKASIRATQQEVEAKPLAPNQRRGHVSRLDRIKALLGR
Ga0210120_10060153	F014856	AGGA	VDIEPYRRSIHDEVVTSALVSAAGTLLDDLIDRLLRSDERVATAAQGKLLIAADDGMEDAADRVQRFVAIATPTVRILARGARFTRVPWVLVASTAVSLTTTVRAGVREVRILGSLLAHQLEQATGAPADPALVKKLAVELYLAPKRTPDVSTLDLPLAQLARKWLLRGAFGRDTRRAAGKALDAAEQLDLDRVLETRRAFE