Scaffold Ga0210142_1000015

Overview

Basic Information

• Taxon OID: 3300025552
• Scaffold ID: Ga0210142_1000015
• Source Dataset Name: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47277
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (75.93%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location

• Location Name: USA: San Francisco Bay, California
• Coordinates
  • Lat. (^o): 38.080353
  • Long. (^o): -122.108833

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062977	Metagenome / Metatranscriptome	130	Y
F103332	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210142_100001540	F062977	AGGAG	MATDDHHSEYLARTVAALTPAGRARVDELLTQLAELVGDRTRLLRFARVRKAEADLGATDAGEPEPALTDQELSSLIAGFVTIRDQEPRDDVADWANAVVALLEDGARAADDRSR
Ga0210142_100001546	F103332	GAG	MSWRRDVDVAGVPVEAHHVPELITRLRMAGYPFVANKVERALGTRTVHVAFGATEREAIVRVIADKPTQFSELYAVLLRDLERRRAGG