Basic Information | |
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Taxon OID | 3300025543 Open in IMG/M |
Scaffold ID | Ga0208303_1002146 Open in IMG/M |
Source Dataset Name | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7519 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.79%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Chesapeake Bay | |||||||
Coordinates | Lat. (o) | 37.1 | Long. (o) | -76.0972 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F036007 | Metagenome | 171 | Y |
F043374 | Metagenome | 156 | N |
F056576 | Metagenome / Metatranscriptome | 137 | N |
F073493 | Metagenome | 120 | Y |
F080000 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208303_10021461 | F056576 | N/A | TFLSTIISWATIDINPLLSGIASVFAIVLSAFLIYKTYLEIKIRKNQLK |
Ga0208303_100214612 | F080000 | N/A | MPKIVSLQDTGRMWKEFHILEVQFDNNDGGTVLAKSPTPAYKVGDDVQYEKNERGGVKIQRDPSNFTPSSNSNYSNNSPRMKQDNSEQIARSVVFKGAIDLVSSGKIQVTDIPSFVEKYLPVVTGAKAQGETYQAHFQESSPF |
Ga0208303_100214614 | F043374 | N/A | MFPSDPTFNELHIREKQMLLGAILIWLNDCAQYAETTQEQNEIINKIIDLVEVDRVLNYFIDYERSSMRFLNEARLINVKLKLENQEMKDTIDKLQKSLDNAAENL |
Ga0208303_10021465 | F073493 | N/A | MTKAEKRIHWKKIEEGEIPDDYQNPFLSHFGFMDYPLDEYQERTRRKLKQYHGYE |
Ga0208303_10021469 | F036007 | N/A | MTLTPTLLKDAVISVEVGKVPSLNSFYASKHWIVRKKAKDKFKAEILEQLDKYDKIKFKSVTVRLETNLGYDIDNCIMAVKFGMDALKDWGGIEDDTKKYFPKLTIIHNSELEKNISKLFFTGHLVD |
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