NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208303_1002146

Scaffold Ga0208303_1002146


Overview

Basic Information
Taxon OID3300025543 Open in IMG/M
Scaffold IDGa0208303_1002146 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7519
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1Long. (o)-76.0972Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036007Metagenome171Y
F043374Metagenome156N
F056576Metagenome / Metatranscriptome137N
F073493Metagenome120Y
F080000Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0208303_10021461F056576N/ATFLSTIISWATIDINPLLSGIASVFAIVLSAFLIYKTYLEIKIRKNQLK
Ga0208303_100214612F080000N/AMPKIVSLQDTGRMWKEFHILEVQFDNNDGGTVLAKSPTPAYKVGDDVQYEKNERGGVKIQRDPSNFTPSSNSNYSNNSPRMKQDNSEQIARSVVFKGAIDLVSSGKIQVTDIPSFVEKYLPVVTGAKAQGETYQAHFQESSPF
Ga0208303_100214614F043374N/AMFPSDPTFNELHIREKQMLLGAILIWLNDCAQYAETTQEQNEIINKIIDLVEVDRVLNYFIDYERSSMRFLNEARLINVKLKLENQEMKDTIDKLQKSLDNAAENL
Ga0208303_10021465F073493N/AMTKAEKRIHWKKIEEGEIPDDYQNPFLSHFGFMDYPLDEYQERTRRKLKQYHGYE
Ga0208303_10021469F036007N/AMTLTPTLLKDAVISVEVGKVPSLNSFYASKHWIVRKKAKDKFKAEILEQLDKYDKIKFKSVTVRLETNLGYDIDNCIMAVKFGMDALKDWGGIEDDTKKYFPKLTIIHNSELEKNISKLFFTGHLVD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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