Scaffold Ga0208303_1000078

Overview

Basic Information

• Taxon OID: 3300025543
• Scaffold ID: Ga0208303_1000078
• Source Dataset Name: Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37976
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (17.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Chesapeake Bay
• Coordinates
  • Lat. (^o): 37.1
  • Long. (^o): -76.0972

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018882	Metagenome / Metatranscriptome	232	Y
F081068	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208303_100007859	F018882	N/A	MIMIDLDKEMAWVTFMGDGWQTKWHPVLCPITGRQLEFDDTIMDRCRAQFNGANGGVWTYFGIAQTSQMLMGNAVRDNL
Ga0208303_100007873	F081068	N/A	MTHDKILSMTDDFIQSNRKDGEIYSHYHYDMMADFALHILETFNTNSK