Scaffold Ga0208848_1006063

Overview

Basic Information

• Taxon OID: 3300025509
• Scaffold ID: Ga0208848_1006063
• Source Dataset Name: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2450
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → unclassified Starkeya → Starkeya sp. ORNL1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: Barrow Environmental Observatory site, Barrow, Alaska
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021514	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208848_10060632	F021514	GGA	MPQNLYLRRQQMVEFSIIDARNNEARMKIEAMLWIVVLILVALSFLFPKTRSFSLSAIGVAIVAIVAIVVVAKRGEPPTLGATAPAAVEKKPIDFERFLVEKLDKADPEAKNRIRMEEIRFDQVRAEAGAERGSIGTVVARLYNDSATYTLTDYGYYLVVQDCIRAVCTTVFDQHGLSAVSVPPNQARDVKIAVRDGSTRDVPPIKILGTANILLTPAATRAGPASSASTD