NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208903_1092545

Scaffold Ga0208903_1092545


Overview

Basic Information
Taxon OID3300025502 Open in IMG/M
Scaffold IDGa0208903_1092545 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)684
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025595Metagenome / Metatranscriptome201N
F095503Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208903_10925451F095503N/AKILTFLNMPKEIVFPVMWIAFIVLMAYKWYSMKYDWSKQDKDYDKASKKYANKLKELK
Ga0208903_10925453F025595AGGAGMTMDINGLSSKFDILTSIKENIQDGDTDTAIDMINQMIEQEPAPGQKRPVADALDHHQIMQKGIVR

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