Scaffold Ga0209557_1011441

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1011441
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3303
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006939	Metagenome / Metatranscriptome	361	N
F030435	Metagenome / Metatranscriptome	185	Y
F033796	Metagenome / Metatranscriptome	176	N
F059965	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_101144111	F030435	AGGA	MDNQEILDMCRRLASKYYTHQDYDDIVSEGVVLCLNMRAEGIKEPSKLYYSARTAMFQYVNVSMSNFSYPKGMAGREAVLEDTIEYVVSDDVDIPSEDLYGSYELKNSIENLKKFLTGREWKVFMILYNNNNNLTDTAEVLKLSKQRVEQIRNKIRDKLVTICELDI
Ga0209557_10114414	F033796	AGG	MSSKQDENKTYKVAGVHIGKKGVTVLDGNKRVLEEAEQSAKLLTGKYALENSLGITNFVAFNTQALTMLPPYSIDMEAEWNYVVEQEGDDTPSVEINRQAEGSI
Ga0209557_10114415	F006939	AGAAGG	MTLPTNMVTNILSENQNKFITVKFLTKDNEERTYTGRMNVIKGLKGNERGRIAAEALRKAGYITLKTKQGYKCFNVDRVLGFVAGGRRIFGLGTEV
Ga0209557_10114417	F059965	GAG	MPIPPSMEMELINLGLIRSDLEELSSIARQTGFHETRAEIKAWHDTLILDGKVMF