Scaffold Ga0209557_1008487

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1008487
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4096
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010919	Metagenome / Metatranscriptome	297	Y
F011006	Metagenome / Metatranscriptome	296	Y
F015148	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_10084875	F010919	N/A	MKETVKLPLEEFKKLYAIKIRLETYFKYMQDDRGVLKDIAPTFLDDAKEYIKEYNELTNEKGYV
Ga0209557_10084877	F011006	N/A	MKKLINRILVKKSIRPYKTIALSTGVIVEHYRNGKLKTQYYGLV
Ga0209557_10084878	F015148	N/A	MDWYSPPEYKEYECTECGAEIDHEGVCSGTCHEASMI