Scaffold Ga0209557_1007197

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1007197
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4575
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F048972	Metagenome	147	N
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_10071972	F070579	N/A	MTFYITGSTRGLGKYLCKHFDCTSVNKPIDLDVDIDKVVDLFEEGDIVILNAHASQLEYIERLKDKCKLVVMGSIAAVNFDRDMPEYSKQKWELEKTVQQLALHSKYPMLYLQLTSSSYKNYKMVANSIEFWINNPDTTFIGYNIND
Ga0209557_10071974	F048972	AGG	MKNLGVCDTIDWDKVIKQCASVDPQFVGPSHKRGDTIPGLDPILDMWEEAGYKTVHEGGTAGWDMFIPGKQFDESVVNAWNEFYGLECNNIWISRVWPGRFAPIHWDVHDDEVNLPDCPRYHCHIGKPQWGHIFIADEEIFYNQPQGTTWKWTDRKIWHAGTNCGTQPKYIWNAW
Ga0209557_10071976	F019396	AGG	MNWEPYLKLDTYGSPCMAQQTYEPLVSSDGKTFCKNYNFPNDYQYMETTDRPLYTQDVCDWFFQNELDYIKKFEGKPYAPEIIDIKDKRIYLKWYGKSCNQIIYGSNLWPEGDWRQQIKEIILDQWDEGVYKLTMYPHCHYADSQGQMRAIDWYGCVPIDKPYIEEKYMQGIIHDTAQFRLEETGKAVDNVLNLETMFKRSLGTHVLWGNQDMSYIYKELFNV