Scaffold Ga0209557_1000348

Overview

Basic Information

• Taxon OID: 3300025483
• Scaffold ID: Ga0209557_1000348
• Source Dataset Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28577
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (12.96%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location

• Location Name: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027845	Metagenome / Metatranscriptome	193	Y
F037221	Metagenome / Metatranscriptome	168	Y
F039623	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209557_100034824	F037221	N/A	MTNWTTEQLKNLKEVTNHKVVYDGYEFVWMSKPDNIWSRHYISNFEDYNKPMSWIHHHTYNWGKEYKQRQEKYLADMRRSLDIDVKIREISREAKVKTKEKVREIVNLKPTISSKDIADILEITTRAVEYHRVDV
Ga0209557_100034834	F027845	N/A	MTQKEIIELVRDIHPEVDHEGVDIVYSDGEYDVDVRFTSWDCLFTIEVYSKADGIPLPIQSKAMTELFDYVVELHTVYMRDSLETQETQDYLDYYER
Ga0209557_100034836	F039623	N/A	VELLDFDNTIKFKKFKCLNTNQIYEIVQTECTGRYIINSIDTIVRSDGLRKSFARMELKTRFNNIEGIPEKDYLIKKKKKK