Scaffold Ga0208689_1021330

Overview

Basic Information

• Taxon OID: 3300025459
• Scaffold ID: Ga0208689_1021330
• Source Dataset Name: Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1741
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location

• Location Name: USA: Minnesota
• Coordinates
  • Lat. (^o): 47.5028
  • Long. (^o): -93.4828
  • Depth (m): 1.5 to 1.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026357	Metagenome / Metatranscriptome	198	Y
F074503	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208689_10213301	F074503	GGAGG	VQRCVLKWLLLLLAAGCLQAEQAPSTPASDAIFLWLAGGISSARIQRLIQTQNAQTQNAQTRDEAQTFSCHATSLCTRALQKAGADSSLIQSLVRQSPDRK
Ga0208689_10213304	F026357	N/A	LYSESEVKAGSKLELVIMLPPGLGLGPGGWTLCEASVVRVRESEGKGMGIAATIDRIELLPELS