NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208424_1000543

Scaffold Ga0208424_1000543


Overview

Basic Information
Taxon OID3300025445 Open in IMG/M
Scaffold IDGa0208424_1000543 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4455
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020891Metagenome221N
F022193Metagenome215N
F023838Metagenome208N
F028156Metagenome192N
F042314Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0208424_10005432F020891N/AMTFAEHAFAACCRKAKEVGRRLNKDEWLATMQAAYDSYPHDGLFASDAPLTQKLLPNGAPAALKPKKLLPKATDEDWLKELEANPAYAGIDIRRELGKAQAWASVRGVGVSQRRFVNWLNKAMTDRPIGLVASDPRTFNRTQSKQQDEPAGWREWVRENSTDPDNANKPWSALDASAQKYIISKLNEPPAVHSPRPSPSPVLDREEVPDSYQPVARQKDAGALLVGDLLRQYR
Ga0208424_10005433F023838GAGMFTSRQLLVLFSSALCLAGLPVTSHGATIDLDRLIRCLEAREGARWASPGGALQFTRATWSEFSTDPYLRASQPDKARQIARKALFLTIQRMERDGIRPSVWLLALRWNCGYEGMRRRMREPWSYAEHVHNLYYDNDFR
Ga0208424_10005434F042314N/AMTHTTGQELKDAGCALVLEHTPERWVADFEQQAAALLKANGSFTAEEVVTMIGQPPNHSNAIGAACRQFVKRNGLTGSYEPARSPSAHGRIITRWSMTTF
Ga0208424_10005438F028156GGTGGMVANKEFRHVSGDELLARAKLCARLLEIIDEVGQASELIKDGKYWDAYRVTNKIELMASEVSLDLHGIDIALGEEGQP
Ga0208424_10005439F022193N/AMTHTDTLDQHVREYYLYHDEQTKFFDDLASANKPVDAGLDEYVALQQMERLHEETGTWNADVWAEKGWW
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Institute for Fundamental Biomedical Research
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