Scaffold Ga0208424

Basic Information
Taxon OID	3300025445 Open in IMG/M
Scaffold ID	Ga0208424_1000333 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208424_1000333 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5802
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5802

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F014844	Metagenome / Metatranscriptome	259	Y
F027489	Metagenome / Metatranscriptome	194	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_10003331	F027489	N/A	DVVGPNPQPDEQPQAPAQLSNDNIKKLSGREYQNLMRIVRHYAQEKITLEMARTMLSAGFGLSAQEVNTLLGVQEQKFSNPTEPWWGEEDDESDLGWGDEEYKVLEVVASKFGSNADEYVVMHSKPMRFDSDLDTQVRQAFAELGEEEKELDEKIVAYRKKNRDASVEEMAKEFGVSKAKIAKRVAYLINKDRYPIARAADQIVEKNLPKGVKEVAEPVLEVRYKYAWAAGFSDKDKRTSREFCKVMMDLADQGKVYTRDDINGISSIMGYSVWNRRGGWYHTASGVNRPQCRHVWEQQIVIRKGNKITKA
Ga0208424_10003333	F000847	N/A	MSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLVLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVNLTRFVESRDDRTAGWVATMTFEIPYSHSVCEIPS
Ga0208424_10003334	F001129	N/A	MPTPILQQMLGQGGTMQFIDAAVSGANFDFIVVNTAATFTTLTGTGGENLLTAYAMSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0208424_10003335	F014844	GGA	MLIGYGYGYPLSTLQGGGLSASAWAAFNTRADADGAATAEAAVSGCLYGRFSVIFNF
Ga0208424_10003337	F009057	N/A	MPTFRKFAFPSQKVADQLLASLQPLDTAVPLGELDGLVCYDILFQDACPASLNAYIVWPTPCGVHSFLGWDAQYEADYQEFATPSTK
Ga0208424_10003339	F007748	N/A	VNLIETTIIGTVSAIVGGAVAWMTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELLVLRQRIESLENTIHILESENASLKAMQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208424_1000333

Overview

Ecosystem & Geography

Associated Families

Sequences