Scaffold Ga0208424_1000006

Overview

Basic Information

• Taxon OID: 3300025445
• Scaffold ID: Ga0208424_1000006
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_>0.8_DNA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36971
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (81.13%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018535	Metagenome / Metatranscriptome	234	Y
F028501	Metagenome / Metatranscriptome	191	Y
F041172	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208424_100000616	F018535	GGAGG	MKTHTDISGPHWPQHLWPYTYTHGDTELLCFVDWEPADRSVGWSGGAWLIHAYAGGVDVVELLKDQVIKDIEQAAAEALQEGPTC
Ga0208424_100000618	F041172	GAGG	MAKLKTALLRAQETAGFIGSNESLLWKAREVLSKALDDPEPFEGLASAETALHLINTYLMETELCKR
Ga0208424_100000619	F028501	GGAGG	MRTITAKYTGICAATGARILAGDLIQWSKGRTVLLERRRTAVDTITLYGENGPQTYYQNARGRCIDAPCCGCCTI