NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208770_1009180

Scaffold Ga0208770_1009180


Overview

Basic Information
Taxon OID3300025438 Open in IMG/M
Scaffold IDGa0208770_1009180 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3181
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F010818Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0208770_10091802F010818AGGVDFADVVGLIATSLAALAIMGTGLVWLIRNVVRDEIKKATLTIQPGFRNGGESLADVAAKVDRISEKLGL
Ga0208770_10091805F006056N/AMTLEITLAGSVIDLDIFEFNVTVAHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGASGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTALDALARIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGTWSDAEGTWADAPLFPPSFNLEAPGVIFAPSWAKTLTPLINDVTVTYGPDESVTQTDSASITQYGRREYRLDTDIKTLGDATTRAAGIMTAQANGLWNLGQISVLVDQLDATDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVTPTFTWSEVGPGAQWFEIVTQSDLVRL
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