Scaffold Ga0208739_1037084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208739_1037084

Scaffold Ga0208739_1037084

Overview

Basic Information
Taxon OID	3300025426 Open in IMG/M
Scaffold ID	Ga0208739_1037084 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	819
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022586	Metagenome / Metatranscriptome	213	N
F042162	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208739_10370841	F042162	N/A	KLFKSSSEVIRDSIDEVTKSYYLNYPREIKENFIKEVLTQVLEWKNKIQERSRSKNITGLDQLLSRKIIDILKEYLRALKEVDIDKRQHELYQVDTLASVTYYAKIEDLVKSPFSLELCKKNNWIIEIPKNN
Ga0208739_10370842	F022586	N/A	MENMENKLSISPNSFYEIIHEDGDLISYEQEKLDKLLDNIILKIKPTPELEKEIVEKIQKAVEITEDIISTIDRFVEDATLAENNIFIGFHEDHEKDAKSSAIKTLDIAVKLRENNFLSLVPVIRNLTTRIEWIEL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.