Basic Information | |
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Taxon OID | 3300025425 Open in IMG/M |
Scaffold ID | Ga0208646_1006782 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3629 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Ace Lake, Antarctica | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006056 | Metagenome | 382 | N |
F009733 | Metagenome | 313 | N |
F010818 | Metagenome / Metatranscriptome | 298 | Y |
F061563 | Metagenome | 131 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208646_10067822 | F010818 | AGG | VDFGDVVGLLATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL |
Ga0208646_10067823 | F009733 | GGA | MSEIDQELHVDTPPEPVEPKKKPTSSKHPKLATETERARAIVRAKLKG |
Ga0208646_10067824 | F061563 | AGGTGG | MITTQQAVMSLRPDIEWSMSGDDVAGITWHTPDVEPLTQAEVVKEVKRLEALAVTTEANQVASLQAARTFALSLGFTEAMLAVMYPQLEGA |
Ga0208646_10067826 | F006056 | N/A | MTLQITLNGSVIDLALFDYSLAVAHGRSDVTATPTASNAQLVLRGDTGPLLELADTVAISFDGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGVTGYSEQTARQRVETILDATNETFVNGGDPDITLYAILEADAQPSTALDAIQQVAAWTGATFFDDPTGRIVFEDYGNRGQTTFAGIWSNQIGTWADAEGTWGSYPTTIGSLPLNAEGIIFAPTWAKTLTPLINDVTVVYGPDLSENQTDSASITQYGRREYRLDTQIKLEADAITRAASIITAQANGLWNLGQVSILMSELDEDQTTQVLNLVSGSLVNVIGLPASGPYSQFNGILEGWTDSYNNGQHILTLSISDPRFSYQMLEFGEVTDTLTWGDVGAEAQWYEIITNSDLIGA |
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