NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208646_1006782

Scaffold Ga0208646_1006782


Overview

Basic Information
Taxon OID3300025425 Open in IMG/M
Scaffold IDGa0208646_1006782 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3629
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F009733Metagenome313N
F010818Metagenome / Metatranscriptome298Y
F061563Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0208646_10067822F010818AGGVDFGDVVGLLATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL
Ga0208646_10067823F009733GGAMSEIDQELHVDTPPEPVEPKKKPTSSKHPKLATETERARAIVRAKLKG
Ga0208646_10067824F061563AGGTGGMITTQQAVMSLRPDIEWSMSGDDVAGITWHTPDVEPLTQAEVVKEVKRLEALAVTTEANQVASLQAARTFALSLGFTEAMLAVMYPQLEGA
Ga0208646_10067826F006056N/AMTLQITLNGSVIDLALFDYSLAVAHGRSDVTATPTASNAQLVLRGDTGPLLELADTVAISFDGVDRFTGAISDLNVSFISTGTPTAITTITAMGNLAKLGYTDVGVTGYSEQTARQRVETILDATNETFVNGGDPDITLYAILEADAQPSTALDAIQQVAAWTGATFFDDPTGRIVFEDYGNRGQTTFAGIWSNQIGTWADAEGTWGSYPTTIGSLPLNAEGIIFAPTWAKTLTPLINDVTVVYGPDLSENQTDSASITQYGRREYRLDTQIKLEADAITRAASIITAQANGLWNLGQVSILMSELDEDQTTQVLNLVSGSLVNVIGLPASGPYSQFNGILEGWTDSYNNGQHILTLSISDPRFSYQMLEFGEVTDTLTWGDVGAEAQWYEIITNSDLIGA
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