Basic Information | |
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Taxon OID | 3300025425 Open in IMG/M |
Scaffold ID | Ga0208646_1001780 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9788 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (23.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Ace Lake, Antarctica | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008137 | Metagenome / Metatranscriptome | 338 | Y |
F032272 | Metagenome | 180 | Y |
F088749 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208646_100178010 | F088749 | GGA | MSNIDNKISFISGFALTSTWTMPLYNLGMALLLGIVGGFGGLVGRWVYKKIWPDV |
Ga0208646_100178011 | F032272 | N/A | MYNKSVLSKILKFAEEEKTISVRRLRTLTLTNKNTPMKIWGTTLDGERYNGREVFTFTGPSRSPGVGYNYNAKGYMIFFDMNKGEYRTFVYNRIDKLELNGITFNVN |
Ga0208646_100178013 | F008137 | N/A | MSFWEIKVDFKDARKVLVIPNITNASNIEKDSFVDVLYNHIIALDKVGDYYWNIILPKPVKKLNLENVKQHIAPLSGDMMNQRAFPPLDLIKIMKDVEYDVIYSHLPDWVQTGRYKNLINTKVIGYCHWWEMKSCNGIDRRAGKPKWMWLPIELLGVSQMETCYLNTQDQKNRVLEEARETFND |
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