NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208646_1000995

Scaffold Ga0208646_1000995


Overview

Basic Information
Taxon OID3300025425 Open in IMG/M
Scaffold IDGa0208646_1000995 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK8 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15203
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (94.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAce Lake, Antarctica
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017336Metagenome / Metatranscriptome241N
F024964Metagenome203Y
F065935Metagenome127Y
F067452Metagenome125Y
F105493Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0208646_10009952F067452AGGAGGMTKKKGSKKMTKKTRSEIGMEASAYFAPNHHLCQNYAQNDSFLTVHKNIKASIHKNAQSSTIMECNFYDTNAIVTDWLQVVSNPLRLFRGLNDCKHYLLHPRQATFYTYTKGTK
Ga0208646_100099521F105493GAGGMETPKEVIRELEKIRNQSEQGIALLAEAEIKYLELASSADRVEATELLSAQGTIVDRQAVAKLKAMDVRFEADLAKVELNRIKAKIRHLSESQMAVMAAGKLIQMEWRG
Ga0208646_10009954F065935GAGGLIDESNDSNKLYWTLGYEAGIELERERIIKVFQAKEAKRTIIEALEYPYTAQELEDTIREGQE
Ga0208646_10009955F024964AGGAMIDMKDMSGKILWTKGREAGIEAERERISKMAEARICFDFHNSGVCDHSVCYGMAELIITIREAKVD
Ga0208646_10009959F017336GAGGMTRACVISHKSPMEANYGLLCAMCYDGLRSALQGAPNALQHLREIYVMRSPMELDTPKPLKKDPPAPFNLDAWQLAEDMWQALTGGYIPVKWNHIQVYGKAREICQALHQDIDNLVNRKEIIYLIPLVKTLDQALYRYPLEEKSRTTLLPCPSCNLKTVYSPPSEFGDDLQVKCHSCGFVIPPEKMAFYANLAERERA
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