Scaffold Ga0208253_1002810

Overview

Basic Information

• Taxon OID: 3300025418
• Scaffold ID: Ga0208253_1002810
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5240
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036100	Metagenome	170	Y
F054678	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208253_10028101	F036100	N/A	MQERTKTTEGIIEMNFTHAVVDDGDIIRKYRWSKREAKWYKDTHPDLDVVKLPKAPKEIFNTNDYEEAPY
Ga0208253_10028106	F054678	GGAG	MSNTKKTIIVENVLVKGYIKHANGRKTPFEFNKQDFTPKSFEKIFEEVGSKF