Scaffold Ga0208877_1010081

Overview

Basic Information

• Taxon OID: 3300025416
• Scaffold ID: Ga0208877_1010081
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1766
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F039102	Metagenome / Metatranscriptome	164	N
F045559	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208877_10100811	F019779	N/A	KKCIKMKDHPAIDFIPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIISRGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIILYATTFTNEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHVKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI
Ga0208877_10100812	F039102	N/A	MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPKLVEFMTETSKVTHSDKVEPIETEEVPKPSISN
Ga0208877_10100813	F045559	N/A	MDLTFENIRQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKDVDLNWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPIWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS