NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208877_1010081

Scaffold Ga0208877_1010081


Overview

Basic Information
Taxon OID3300025416 Open in IMG/M
Scaffold IDGa0208877_1010081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F039102Metagenome / Metatranscriptome164N
F045559Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208877_10100811F019779N/AKKCIKMKDHPAIDFIPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIISRGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIILYATTFTNEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHVKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI
Ga0208877_10100812F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPKLVEFMTETSKVTHSDKVEPIETEEVPKPSISN
Ga0208877_10100813F045559N/AMDLTFENIRQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKDVDLNWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPIWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS

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