Basic Information | |
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Taxon OID | 3300025416 Open in IMG/M |
Scaffold ID | Ga0208877_1010081 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH29Jun09 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1766 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F019779 | Metagenome / Metatranscriptome | 227 | N |
F039102 | Metagenome / Metatranscriptome | 164 | N |
F045559 | Metagenome / Metatranscriptome | 152 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208877_10100811 | F019779 | N/A | KKCIKMKDHPAIDFIPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIISRGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIILYATTFTNEANKAKVEKFRGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHVKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI |
Ga0208877_10100812 | F039102 | N/A | MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPKLVEFMTETSKVTHSDKVEPIETEEVPKPSISN |
Ga0208877_10100813 | F045559 | N/A | MDLTFENIRQTTQASELRKDVAKENYKYVKLTGISNVINSLHSTDFSNEPLMHDRMNRIHVLKWKIKDVDLNWHLTDQVALMEHQILDLLDGIDHMKPWNEVGNKLKYMALFSIIENLRKLHPIWGIHLESLETPEKNHWCKCYKCHEARMQKYKIVIQDNPETERLDESS |
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