NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208868_1006926

Scaffold Ga0208868_1006926


Overview

Basic Information
Taxon OID3300025415 Open in IMG/M
Scaffold IDGa0208868_1006926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1752
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010592Metagenome301Y
F078045Metagenome116N
F096494Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208868_10069262F096494GAGGMNPKDLADYLEANVTPTVAIAGDITMDSIIKVLRKQQEDLEYMQEQFDRAIEFLAKCNGWSKNK
Ga0208868_10069264F078045AGGMSYEHFVNNYQRWLKSPRTLSEAFKDAEYATSITRSEDGEYSLFWGLLGALLFVAIFGYGFWRYVNL
Ga0208868_10069265F010592N/AMSTYKPFSQDLHDVYDAPARQAVSTWIQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITLFKIANLTDVF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.