Scaffold Ga0208868_1006926

Overview

Basic Information

• Taxon OID: 3300025415
• Scaffold ID: Ga0208868_1006926
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1752
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010592	Metagenome	301	Y
F078045	Metagenome	116	N
F096494	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208868_10069262	F096494	GAGG	MNPKDLADYLEANVTPTVAIAGDITMDSIIKVLRKQQEDLEYMQEQFDRAIEFLAKCNGWSKNK
Ga0208868_10069264	F078045	AGG	MSYEHFVNNYQRWLKSPRTLSEAFKDAEYATSITRSEDGEYSLFWGLLGALLFVAIFGYGFWRYVNL
Ga0208868_10069265	F010592	N/A	MSTYKPFSQDLHDVYDAPARQAVSTWIQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITLFKIANLTDVF