Scaffold Ga0208868_1000125

Overview

Basic Information

• Taxon OID: 3300025415
• Scaffold ID: Ga0208868_1000125
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Oct07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17389
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (63.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085632	Metagenome	111	N
F104331	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208868_100012517	F085632	GAG	MTDHFKEQYEAIQATIPDVPRDMPYYQINVPLWLFWRKIDPMAVEHPIMTEQEITRRLDLLYMGDGTC
Ga0208868_100012522	F104331	GGA	MRTFTYYFDELSIMPRYAVYAAGEAEVSYNIASPEPDVGIFEHYATDISVDAIVIYGHGHNDSKLNLDADHWLYSHIEQALLDDESLAYACMEDAS