NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208194_1071446

Scaffold Ga0208194_1071446


Overview

Basic Information
Taxon OID3300025412 Open in IMG/M
Scaffold IDGa0208194_1071446 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)529
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021252Metagenome / Metatranscriptome219Y
F064315Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208194_10714461F064315N/AALPGRRQTASQIAAFNNRREAQWGVSPRDRQAVLAAFQARPFVMLKAA
Ga0208194_10714462F021252AGGMADQAERVILEAEDLVTPVVDKANAGLDSLEKKAESSHGKVIRISDQTRSSVQRLIASLEKQAETYGKSGVDRLVAQRDQLLQRYNREPQAIDAITKSYEKMIATQRQIDSEAKFEGFGEKVKQFI

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