NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208462_1005822

Scaffold Ga0208462_1005822


Overview

Basic Information
Taxon OID3300025408 Open in IMG/M
Scaffold IDGa0208462_1005822 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU001_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4135
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameChina: Chengdu, Sichuan
CoordinatesLat. (o)30.66Long. (o)104.06Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F034940Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0208462_100582210F005744AGGAGMDETFEIIKAGAPNAPPEQALYRIQQTYPDGSGGRLNVDWEGLLRLHELIHDRIALEGCVCETCSTRGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEIRRLAENRKVD
Ga0208462_100582216F034940N/AYRAQYAGMTKVCMRQSIVECGRIRRFGLCPIPPDSEAWRRCGFAIGQHEIPMMVEE

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