NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208876_1019425

Scaffold Ga0208876_1019425


Overview

Basic Information
Taxon OID3300025402 Open in IMG/M
Scaffold IDGa0208876_1019425 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1158
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057099Metagenome / Metatranscriptome136N
F073066Metagenome / Metatranscriptome120N
F085120Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0208876_10194252F085120N/AMKNQVRIIQLLNRLENMLKIEIEKARTDQDKDAIKLLDKLYDLVKKTEVNYLAQKH
Ga0208876_10194253F073066N/AMEEDLRKIHLESLLNNLEDSDKDRKIEICNIMKEMVKEETEKAKRNQDNDITHFLNKLKELLEKTINRYSE
Ga0208876_10194254F057099N/AMKILRKDWELISKIAWNILNLKLEDSKKTLDLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNSANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLF
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