Scaffold Ga0207955_1020459

Overview

Basic Information

• Taxon OID: 3300025401
• Scaffold ID: Ga0207955_1020459
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1234
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057099	Metagenome / Metatranscriptome	136	N
F065414	Metagenome / Metatranscriptome	127	N
F073066	Metagenome / Metatranscriptome	120	N
F085120	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207955_10204591	F085120	N/A	LLNKLENMLKTEIEKARTDQDKDAIKLLDKLYDLVKKTEVNYLAQKH
Ga0207955_10204592	F073066	N/A	MEEDLRKIHLESLLNNLEDSDKDKKVEICNIMKEMVKEEIEQAKRNQNNDMTHFLNKLRELLEKTINHYSE
Ga0207955_10204593	F057099	N/A	MKILRKDWELINKIAWNILNLKLEDSKKTLNLGSSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVKIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYR
Ga0207955_10204594	F065414	N/A	MSEPEVIINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKKKFKLIFKVLKRIKAMEPDNYLNLASYIVSRNGV