NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208874_1010274

Scaffold Ga0208874_1010274


Overview

Basic Information
Taxon OID3300025396 Open in IMG/M
Scaffold IDGa0208874_1010274 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1692
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013275Metagenome / Metatranscriptome272N
F028152Metagenome / Metatranscriptome192N
F054590Metagenome / Metatranscriptome139N
F062430Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0208874_10102741F062430AGGMLQEKPEINNEVITKEGTSEDCGHEPHGCTCPPSAEYEKSTEIRSLTNLIRLVYSVPLINGLISYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQVLNQIDTIDISVPWDD
Ga0208874_10102742F028152N/AMDNIGEAIRSVTRIASKARPLLEPRRQEIHAVMHTNGDPYVIRACTNSLIVINEIERMQSETESLCDYLFNHYFTSEYAKEKRALLVLQPGPVVSDKNFFSHRLESLKIQRENFVRIEKVSIGKLSVQYCLTPTFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKGKTNFEITEVRKTSPYESKDPREVNFRIPKIKNETKIVTRVRNPTYLDFLYRP
Ga0208874_10102743F054590N/AMIENIAELRKNVGFTKLHRLANYKQRRQVADILLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSGILFKKRKRNLIHPWTI
Ga0208874_10102744F013275N/ALKTHLLWMTLSTIANYSSAGNISSKYVRAYLAIMVWLLITFNSDRSGAQRLIMAFLYLEFNLIERIIEAVNHSAIIIKAAMLCMGLSSILVNPEMNYEQAIVLTILLAAAEYIPYQWEIETLIPRATKYFKIK

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