Scaffold Ga0209825_1006981

Overview

Basic Information

• Taxon OID: 3300025394
• Scaffold ID: Ga0209825_1006981
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN8B Hudson Canyon (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2833
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.29
  • Long. (^o): -72.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055413	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209825_10069812	F055413	GAGG	MLKITDLAENKELDRKTMSGVRGGFDPFAILIDGSTSLNNKVADVDQVFAFGFAQNNAAAVTNNQAINGGNGITYAPVTQNLDQYSDMNVSGIGNVSVS
Ga0209825_10069813	F055413	GAGG	MLKVTDLAINKELDSKTMTSVRGGFDPFAILIDGSTSLNNKVADVDQVFQLALSQTNAGEVTNNQAINGGNGIVYAPVDQNLSQSNWMDVSGIGNVSVS
Ga0209825_10069814	F055413	GAGG	MLKITDLAENKELDRKTMSGVRGGFDPFAILIDGSTSLTNKVADVDQAFAFGLAQNNAGAVTNNQAINGGNGITYAPVNQTLTQDSAMSVYDIGNVYVS
Ga0209825_10069815	F055413	GAGG	MLNIKDLAENKELDSKTMAGVRGGFDPFAILIDGSTSSINKVADVDQVFQLALSQTNAGEVTNNQAINGGNGIVYAPVDQNLSQSNWMNVSGIGNVSVS
Ga0209825_10069816	F055413	GAGG	MLKVTDLAINKELDSKTMTSVRGGFDPFAILIDGSTSLTNKVADVDQVFAFGFEQNNAAAVTNNQAINGGNGLAYAPVTQNLDQYSDMNVSGIGNVSVS