Scaffold Ga0208041_1009551

Overview

Basic Information

• Taxon OID: 3300025393
• Scaffold ID: Ga0208041_1009551
• Source Dataset Name: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2498
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location

• Location Name: China: Chengdu, Sichuan
• Coordinates
  • Lat. (^o): 30.66
  • Long. (^o): 104.06

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076220	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208041_10095513	F076220	GAGG	MNPIPEAARSGLEKFLKEDLAGAVVTTTSPYVDEDGQIYFDEIALRLGDGREVVVAAEMRSKWPAIVLEINPGDGWRDMSVPEDYRDELEGLTAEPWHPEPPETWDRE