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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025393 Open in IMG/M |
| Scaffold ID | Ga0208041_1003291 Open in IMG/M |
| Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7303 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | China: Chengdu, Sichuan | |||||||
| Coordinates | Lat. (o) | 30.66 | Long. (o) | 104.06 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055749 | Metagenome / Metatranscriptome | 138 | N |
| F095523 | Metagenome / Metatranscriptome | 105 | N |
| F103315 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208041_10032915 | F095523 | GGAGG | MGVSIPIEYLYITVGLLVVAVIYIINDKNNARLYNPEGPLFVKARKKEIPILRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQQTILRHRRDLPEFADLDFLSDRDLLVLLSSPSDHLPHDAQIFTNNYKPTIVEIDESGQPVEVEMNAADLVDRITAFRKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISIAAG |
| Ga0208041_10032917 | F055749 | N/A | MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPPLGADSDWNTTTNPDLPSGASMWSQLGPLLVLAVLALVIGLVIMYFRNAAG |
| Ga0208041_10032919 | F103315 | GGAGG | MITVEIYIFLAAVVAAAFVYIFLDLDNRLYGNLFAASFAGIMSGLLALWSFNENTVTITTVPQTAIAVQHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEILHESRMPDDEEAYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |