Basic Information | |
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Taxon OID | 3300025393 Open in IMG/M |
Scaffold ID | Ga0208041_1003291 Open in IMG/M |
Source Dataset Name | Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from China - AD_SCU002_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7303 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (69.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Chengdu, Sichuan | |||||||
Coordinates | Lat. (o) | 30.66 | Long. (o) | 104.06 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F055749 | Metagenome / Metatranscriptome | 138 | N |
F095523 | Metagenome / Metatranscriptome | 105 | N |
F103315 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208041_10032915 | F095523 | GGAGG | MGVSIPIEYLYITVGLLVVAVIYIINDKNNARLYNPEGPLFVKARKKEIPILRVIDPGTNHARHILGDKERDDDPVYAKDMWGLHADPAYIEGDASPERHPGGLLIYNISPNVTFPISPRNVLAQQTILRHRRDLPEFADLDFLSDRDLLVLLSSPSDHLPHDAQIFTNNYKPTIVEIDESGQPVEVEMNAADLVDRITAFRKYATTLPVEGGGFAYHEYFRNNPYGHSSQTTQRINYLFQKIADRKSAMADKLWTYGLIAIGLLGAVGVTIYIISIAAG |
Ga0208041_10032917 | F055749 | N/A | MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPPLGADSDWNTTTNPDLPSGASMWSQLGPLLVLAVLALVIGLVIMYFRNAAG |
Ga0208041_10032919 | F103315 | GGAGG | MITVEIYIFLAAVVAAAFVYIFLDLDNRLYGNLFAASFAGIMSGLLALWSFNENTVTITTVPQTAIAVQHYLNDTLANVTTTYAYQTHIVPIVDPALGYFWMLVMVFMWFLVGYFVLEILHESRMPDDEEAYE |
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