Scaffold Ga0208503_1006900

Overview

Basic Information

• Taxon OID: 3300025388
• Scaffold ID: Ga0208503_1006900
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1427
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019779	Metagenome / Metatranscriptome	227	N
F031758	Metagenome / Metatranscriptome	181	N
F039102	Metagenome / Metatranscriptome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208503_10069001	F039102	N/A	MNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKMDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVSRLVEFMTETSKVTHPDRIEPMETEEVSKPSSSN
Ga0208503_10069002	F019779	AGAAG	MKDHPAIDFIPMDVEGEEVRFPETLDSPSIENEIECSGERCFTPPEDDWEVISRGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIVLYTTTFINEANKAKVEKFKGFISDLLDFAKTNITKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRCTIRRRVSRRYSI
Ga0208503_10069003	F031758	N/A	VILQVRNTKKRILEIDPNWKLGNKYFNYVHKVISLIDEINTLDEINLEKQRKTFRKILKTTKALRQTDQLWRMNPTIILEFLKWNSKTIMSAEQVSRKPREQVPLN