Scaffold Ga0208503_1005760

Overview

Basic Information

• Taxon OID: 3300025388
• Scaffold ID: Ga0208503_1005760
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE31Jul07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1602
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015585	Metagenome / Metatranscriptome	253	N
F016361	Metagenome / Metatranscriptome	247	Y
F032250	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208503_10057602	F032250	N/A	MQMCTVEKEKSFLKMQNEGNSSQAETNREANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF
Ga0208503_10057604	F016361	N/A	MCKKRELTEEPLINRVRQPINERLIQTLLQKQLALMALMDTMTITMDPEKGKKVFQEIVSIMKELKNIEARCTC
Ga0208503_10057605	F015585	N/A	MSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGLSEEEKFFSSPW