Scaffold Ga0207956

Basic Information
Taxon OID	3300025385 Open in IMG/M
Scaffold ID	Ga0207956_1001979 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025385 Open in IMG/M

Scaffold ID

Ga0207956_1001979 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Jul07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4374
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4374

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (27.27%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F046173	Metagenome / Metatranscriptome	151	N
F069678	Metagenome / Metatranscriptome	123	N
F073069	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207956_100197911	F069678	N/A	MSNQEQLAEGTSLTETLVDTVKTELIYKLKLCIDEINTEVDEVTYENIWSYEKMNRILANVRKLDPSWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENERPDDITMAGTAHAYR
Ga0207956_10019793	F073069	N/A	MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETKSILKENFILMYEINIKLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY
Ga0207956_10019794	F046173	GAG	MLSLKDREIYEIIIVEIENYKNSDHDKMSKRINYAAKSPALDIILNKIFLKTAMINLELKYYYEEVIGVSKHILEQYLTGKSIGVQLYIKEIDTFYKEKLIGRLDKLKDTIRSDIPIKISEIQETHQRIRKDQDKLNKMKQDPQYNNMQQWGIQLSLERVIEIDSKLINLTKLLNYITEKQKEQE
Ga0207956_10019795	F041008	N/A	MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVMNDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207956_1001979

Overview

Ecosystem & Geography

Associated Families

Sequences